PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1092

Common Name

SPL20

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 473aa MW: 52252.3 Da PI: 8.4025

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1092	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.5e-41	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v++ gle rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Gh_A03G1092 182 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIIGGLELRFCQQCSRFHALSEFDEKKRSCRRRLSHHNARRRKPQT 259 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-33	176	244	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.445	180	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-39	181	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-32	183	256	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDWSAKTPLQ WEWENLMMLN ATPTEIPRKL RSVEWDIEGK EELDSGSLYS SGAAAGGSGG 60 SGSDLGLVSL SKSSKSASFN SSSAGEVKAT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP 120 IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSPYSAT PAPSPSPAKR SKPNCQTKHI 180 LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIIGGLE LRFCQQCSRF HALSEFDEKK 240 RSCRRRLSHH NARRRKPQTD AIHFSAARPS PAAYDGKQLM SFVWNKVPFL HNARPNENFS 300 WEGTFVSKSS ETKGYALTKA GNVNGQLQLP GNQLLNSMTS RCYDSNRFPV KGKQNTVEVL 360 NQGVEESTVA SNMGTTQDFH RALSLLSNES WVSCEPKQHG SLAYPVQVSG SSMSQPTMNV 420 ISQSFPIPYA LSENWQMEQE QTTQSQVEGD NHLQEFQLLK APYDNSFYSN QMN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDWSAKTPLQ WEWENLMMLN ATPTEIPRKL RSVEWDIEGK EELDSGSLYS SGAAAGGSGG  60
SGSDLGLVSL SKSSKSASFN SSSAGEVKAT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP  120
IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSPYSAT PAPSPSPAKR SKPNCQTKHI  180
LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIIGGLE LRFCQQCSRF HALSEFDEKK  240
RSCRRRLSHH NARRRKPQTD AIHFSAARPS PAAYDGKQLM SFVWNKVPFL HNARPNENFS  300
WEGTFVSKSS ETKGYALTKA GNVNGQLQLP GNQLLNSMTS RCYDSNRFPV KGKQNTVEVL  360
NQGVEESTVA SNMGTTQDFH RALSLLSNES WVSCEPKQHG SLAYPVQVSG SSMSQPTMNV  420
ISQSFPIPYA LSENWQMEQE QTTQSQVEGD NHLQEFQLLK APYDNSFYSN QMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	183	256	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLSHHNARRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622328	0.0	KJ622328.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479133.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_012479134.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_012479135.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_012479136.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
TrEMBL	A0A088DLF9	0.0	A0A088DLF9_G
STRING	VIT_01s0010g03710.t01	1e-157	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6562	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-63	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]