PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1092
Common NameSPL20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 473aa    MW: 52252.3 Da    PI: 8.4025
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1092genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41182259178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v++ gle rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  Gh_A03G1092 182 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIIGGLELRFCQQCSRFHALSEFDEKKRSCRRRLSHHNARRRKPQT 259
                  6**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33176244IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445180257IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-39181263IPR004333Transcription factor, SBP-box
PfamPF031102.1E-32183256IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDWSAKTPLQ WEWENLMMLN ATPTEIPRKL RSVEWDIEGK EELDSGSLYS SGAAAGGSGG  60
SGSDLGLVSL SKSSKSASFN SSSAGEVKAT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP  120
IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSPYSAT PAPSPSPAKR SKPNCQTKHI  180
LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIIGGLE LRFCQQCSRF HALSEFDEKK  240
RSCRRRLSHH NARRRKPQTD AIHFSAARPS PAAYDGKQLM SFVWNKVPFL HNARPNENFS  300
WEGTFVSKSS ETKGYALTKA GNVNGQLQLP GNQLLNSMTS RCYDSNRFPV KGKQNTVEVL  360
NQGVEESTVA SNMGTTQDFH RALSLLSNES WVSCEPKQHG SLAYPVQVSG SSMSQPTMNV  420
ISQSFPIPYA LSENWQMEQE QTTQSQVEGD NHLQEFQLLK APYDNSFYSN QMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271832561184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KKRSCRRRLSHHNARRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223280.0KJ622328.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479133.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012479134.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012479135.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012479136.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A088DLF90.0A0A088DLF9_G
STRINGVIT_01s0010g03710.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-63squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Zhang X, et al.
    Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum.
    Mol. Genet. Genomics, 2015. 290(1): p. 115-26
    [PMID:25159110]